X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSeqDistanceContactMatrix.java;h=f8fd750955d0861ca20606d3b4b6a7ea85ff7812;hb=c956ba7ae40dd7f269aa372044ed4ed5f28fb042;hp=ec19b25eb2b266d8503e86df4faf59f155f8780d;hpb=cc3341f9d1465b0226d184be4216d022a62e5cee;p=jalview.git

diff --git a/src/jalview/datamodel/SeqDistanceContactMatrix.java b/src/jalview/datamodel/SeqDistanceContactMatrix.java
index ec19b25..f8fd750 100644
--- a/src/jalview/datamodel/SeqDistanceContactMatrix.java
+++ b/src/jalview/datamodel/SeqDistanceContactMatrix.java
@@ -7,14 +7,15 @@ import java.util.List;
 
 import jalview.util.MapList;
 import jalview.ws.datamodel.alphafold.MappableContactMatrix;
-
 /**
  * Dummy contact matrix based on sequence distance
  * 
  * @author jprocter
  *
  */
-public class SeqDistanceContactMatrix extends MappableContactMatrix<SeqDistanceContactMatrix> implements ContactMatrixI
+public class SeqDistanceContactMatrix
+        extends MappableContactMatrix<SeqDistanceContactMatrix>
+        implements ContactMatrixI
 {
   private static final String SEQUENCE_DISTANCE = "SEQUENCE_DISTANCE";
   private int width = 0;
@@ -82,6 +83,7 @@ public class SeqDistanceContactMatrix extends MappableContactMatrix<SeqDistanceC
       }
     });
   }
+
   @Override
   public String getAnnotDescr()
   {
@@ -114,14 +116,13 @@ public class SeqDistanceContactMatrix extends MappableContactMatrix<SeqDistanceC
   @Override
   protected double getElementAt(int _column, int i)
   {
-    return Math.abs(_column-i);
+    return Math.abs(_column - i);
   }
-
   @Override
   protected SeqDistanceContactMatrix newMappableContactMatrix(
           SequenceI newRefSeq, MapList newFromMapList)
   {
-    
+
     return new SeqDistanceContactMatrix(width);
   }
 }