X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSeqDistanceContactMatrix.java;h=f8fd750955d0861ca20606d3b4b6a7ea85ff7812;hb=d622d93ba5a3e596a4ea29bc1ba75bf2acacfdf0;hp=89daeb238e6065950425907a12d5bc28f9241388;hpb=80b889f0cca49103e1b20ed806755a0719789906;p=jalview.git diff --git a/src/jalview/datamodel/SeqDistanceContactMatrix.java b/src/jalview/datamodel/SeqDistanceContactMatrix.java index 89daeb2..f8fd750 100644 --- a/src/jalview/datamodel/SeqDistanceContactMatrix.java +++ b/src/jalview/datamodel/SeqDistanceContactMatrix.java @@ -7,7 +7,6 @@ import java.util.List; import jalview.util.MapList; import jalview.ws.datamodel.alphafold.MappableContactMatrix; - /** * Dummy contact matrix based on sequence distance * @@ -19,7 +18,6 @@ public class SeqDistanceContactMatrix implements ContactMatrixI { private static final String SEQUENCE_DISTANCE = "SEQUENCE_DISTANCE"; - private int width = 0; public SeqDistanceContactMatrix(int width) @@ -115,13 +113,11 @@ public class SeqDistanceContactMatrix { return width; } - @Override protected double getElementAt(int _column, int i) { return Math.abs(_column - i); } - @Override protected SeqDistanceContactMatrix newMappableContactMatrix( SequenceI newRefSeq, MapList newFromMapList)