X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequence.java;fp=src%2Fjalview%2Fdatamodel%2FSequence.java;h=65857ce0a4ff4d5ea504446f5dfbf46f49fdfe0e;hb=2a18c50afc08aeb2e2003e77efbdadaa4643652c;hp=257f88a3009e541ce8b8489af77c9bf08f88f29f;hpb=4cc8dcf14fd3879de220311a3b091ddf87d6d6b0;p=jalview.git

diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java
index 257f88a..65857ce 100755
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -882,6 +882,29 @@ public class Sequence
     }
     return seq;
   }
+
+  /* (non-Javadoc)
+   * @see jalview.datamodel.SequenceI#createDatasetSequence()
+   */
+  public SequenceI createDatasetSequence()
+  {
+    if (datasetSequence==null)
+    {
+      datasetSequence = new Sequence(getName(),
+              AlignSeq.extractGaps(
+                jalview.util.Comparison.GapChars,
+                getSequenceAsString()),
+            getStart(),
+            getEnd());
+      datasetSequence.setSequenceFeatures(getSequenceFeatures());
+      datasetSequence.setDescription(getDescription());
+      setSequenceFeatures(null);
+      // move database references onto dataset sequence
+      datasetSequence.setDBRef(getDBRef());
+      setDBRef(null);
+    }
+    return datasetSequence;
+  }
   /* (non-Javadoc)
    * @see jalview.datamodel.SequenceI#setAlignmentAnnotation(AlignmmentAnnotation[] annotations)
    */