X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequence.java;h=8176221a095b2038663bd5de505ae26a344c9a90;hb=1810df9d010000e434975a8a4e68dcbda238f7f1;hp=a8cff264d2e5cd8c65b4ddb4dae0bace3e42691b;hpb=6568287d7ca9ab336a83e27b9bfbd548a10cf748;p=jalview.git

diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java
index a8cff26..8176221 100755
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -839,7 +839,7 @@ public class Sequence extends ASequence implements SequenceI
       {
         if (lastj != -1)
         {
-          map.set(lastj, j - 1);
+          map.set(lastj, j);
           lastj = -1;
         }
       }
@@ -847,7 +847,7 @@ public class Sequence extends ASequence implements SequenceI
     }
     if (lastj != -1)
     {
-      map.set(lastj, j - 1);
+      map.set(lastj, j);
       lastj = -1;
     }
     return map;