X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequence.java;h=9e81d8188df0e7c3f4047e13d3ac47b283e75209;hb=c68e41c5f6d66c05ded22a514e5b0fa5775627b6;hp=1905f421569d5d1b046812c31653d4aa57f64001;hpb=9f58b747475c9aae8d5acfb52b5c25c778662e4e;p=jalview.git

diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java
index 1905f42..9e81d81 100755
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -77,11 +77,6 @@ public class Sequence extends ASequence implements SequenceI
    */
   Vector<AlignmentAnnotation> annotation;
 
-  /**
-   * The index of the sequence in a MSA
-   */
-  int index = -1;
-
   private SequenceFeaturesI sequenceFeatureStore;
 
   /*
@@ -1739,30 +1734,6 @@ public class Sequence extends ASequence implements SequenceI
     }
   }
 
-  /**
-   * @return The index (zero-based) on this sequence in the MSA. It returns
-   *         {@code -1} if this information is not available.
-   */
-  @Override
-  public int getIndex()
-  {
-    return index;
-  }
-
-  /**
-   * Defines the position of this sequence in the MSA. Use the value {@code -1}
-   * if this information is undefined.
-   * 
-   * @param The
-   *          position for this sequence. This value is zero-based (zero for
-   *          this first sequence)
-   */
-  @Override
-  public void setIndex(int value)
-  {
-    index = value;
-  }
-
   @Override
   public void setRNA(RNA r)
   {