X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequence.java;h=c8bd902eb02f23a618ae5eb15ca208b3572ce300;hb=a21b84a669a9620f6943b9b5054e8756cb6f0687;hp=9f65f71fea1acd6644e08766108bce20339054f3;hpb=1503bcb2b548b7f6bc11bcbf081455ab94839099;p=jalview.git diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java index 9f65f71..c8bd902 100755 --- a/src/jalview/datamodel/Sequence.java +++ b/src/jalview/datamodel/Sequence.java @@ -228,10 +228,10 @@ public class Sequence extends ASequence implements SequenceI } } setDatasetSequence(seq.getDatasetSequence()); - if (datasetSequence == null && seq.getDBRef() != null) + if (datasetSequence == null && seq.getDBRefs() != null) { // only copy DBRefs if we really are a dataset sequence - DBRefEntry[] dbr = seq.getDBRef(); + DBRefEntry[] dbr = seq.getDBRefs(); for (int i = 0; i < dbr.length; i++) { addDBRef(new DBRefEntry(dbr[i])); @@ -917,12 +917,12 @@ public class Sequence extends ASequence implements SequenceI } @Override - public DBRefEntry[] getDBRef() + public DBRefEntry[] getDBRefs() { if (dbrefs == null && datasetSequence != null && this != datasetSequence) { - return datasetSequence.getDBRef(); + return datasetSequence.getDBRefs(); } return dbrefs; } @@ -1079,7 +1079,7 @@ public class Sequence extends ASequence implements SequenceI datasetSequence.setDescription(getDescription()); setSequenceFeatures(null); // move database references onto dataset sequence - datasetSequence.setDBRef(getDBRef()); + datasetSequence.setDBRef(getDBRefs()); setDBRef(null); datasetSequence.setPDBId(getAllPDBEntries()); setPDBId(null); @@ -1255,7 +1255,7 @@ public class Sequence extends ASequence implements SequenceI } } // transfer database references - DBRefEntry[] entryRefs = entry.getDBRef(); + DBRefEntry[] entryRefs = entry.getDBRefs(); if (entryRefs != null) { for (int r = 0; r < entryRefs.length; r++)