X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequence.java;h=eceddf11607d4b5a05d8489a0a414313f7f157f5;hb=22be3f466cd70cb03d5eae619ede8589ae69716a;hp=d35cbe851af4a23ed6033ae791fb8f87c9968164;hpb=8116c10ff719ac0b542b33dbabfc9051634bf5ea;p=jalview.git

diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java
index d35cbe8..eceddf1 100755
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -2,7 +2,7 @@ package jalview.datamodel;
 
 import jalview.analysis.*;
 import java.awt.*;
-import java.util.StringTokenizer;
+import java.util.*;
 import MCview.*;
 
 
@@ -10,19 +10,38 @@ public class Sequence implements SequenceI
 {
   protected String   name;
   protected String   sequence;
+  protected String description;
   protected int      start;
   protected int      end;
-  protected String   description;
-  protected int      charHeight;
   protected String   displayId;
   protected Color    color = Color.white;
+  String pdbId;
   PDBfile pdb;
-   public int maxchain = -1;
 
+   public int maxchain = -1;
    public int pdbstart;
    public int pdbend;
    public int seqstart;
    public int seqend;
+
+   public Vector sequenceFeatures = new Vector();
+   public void setSequenceFeatures(Vector v)
+   {
+     sequenceFeatures = v;
+   }
+
+   public Vector getSequenceFeatures()
+   {return sequenceFeatures; }
+
+   public void setPDBId(String id)
+   {
+     pdbId = id;
+   }
+   public String getPDBId()
+   {
+     return pdbId;
+   }
+
    public void setPDBfile(PDBfile pdb)
    {
      this.pdb = pdb;