X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceFeature.java;h=6eeba2fbbb60119c53a7f2bfca4b464fe5076ee1;hb=8886aa756d24c0f1a06f54474298c4c93b0cbccf;hp=7a539d0db1d8f3c4f72d154c756b51999c6c5607;hpb=ceeba9a56384d551389260f71366fe414be37e34;p=jalview.git
diff --git a/src/jalview/datamodel/SequenceFeature.java b/src/jalview/datamodel/SequenceFeature.java
index 7a539d0..6eeba2f 100755
--- a/src/jalview/datamodel/SequenceFeature.java
+++ b/src/jalview/datamodel/SequenceFeature.java
@@ -608,6 +608,8 @@ public class SequenceFeature implements FeatureLocationI
sb.append(String.format(ROW_DATA, "Location", name,
begin == end ? begin
: begin + (isContactFeature() ? ":" : "-") + end));
+
+ String consequence = "";
if (mf != null)
{
int[] beginRange = mf.getMappedPositions(begin, begin);
@@ -619,8 +621,7 @@ public class SequenceFeature implements FeatureLocationI
: from + (isContactFeature() ? ":" : "-") + to));
if (mf.isFromCds())
{
- sb.append(String.format(ROW_DATA, "Consequence",
- mf.findProteinVariants(this), "imputed by Jalview"));
+ consequence = mf.findProteinVariants(this);
}
}
sb.append(String.format(ROW_DATA, "Type", type, ""));
@@ -635,6 +636,12 @@ public class SequenceFeature implements FeatureLocationI
sb.append(String.format(ROW_DATA, "Group", featureGroup, ""));
}
+ if (!consequence.isEmpty())
+ {
+ sb.append(String.format(ROW_DATA, "Consequence",
+ "Translated by Jalview", consequence));
+ }
+
if (otherDetails != null)
{
TreeMap ordered = new TreeMap<>(