X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceFeature.java;h=f8444a09f8c07b4f64fdab05fce14b2c897f3d30;hb=cb8ec179c020265666678572815ab056a024da22;hp=1adff257d1318a19459b6cb4d9a2fbc33feef438;hpb=55e2e9b22b133db8b9ff0979b0338a33081fc8fd;p=jalview.git

diff --git a/src/jalview/datamodel/SequenceFeature.java b/src/jalview/datamodel/SequenceFeature.java
index 1adff25..f8444a0 100755
--- a/src/jalview/datamodel/SequenceFeature.java
+++ b/src/jalview/datamodel/SequenceFeature.java
@@ -26,17 +26,25 @@ package jalview.datamodel;
  */
 public class SequenceFeature
 {
-    int position;
-    int begin;
-    int end;
-    String type;
-    String description;
-    String status;
+    public int position;
+    public int begin;
+    public int end;
+    public String type;
+    public String description;
+    public String status;
+
+    // Feature group can be set from a features file
+    // as a group of features between STARTGROUP and ENDGROUP markers
+    public String featureGroup;
 
     public SequenceFeature()
     {}
 
-    public SequenceFeature(String type, String desc, String status, int begin, int end)
+    public SequenceFeature(String type,
+                           String desc,
+                           String status,
+                           int begin, int end,
+                           String featureGroup)
     {
       this.type = type;
       this.description = desc;
@@ -44,8 +52,24 @@ public class SequenceFeature
       this.position = begin;
       this.begin = begin;
       this.end = end;
+      this.featureGroup = featureGroup;
+    }
+
+    public boolean equals(SequenceFeature sf)
+    {
+      if(begin != sf.begin
+      || end != sf.end)
+     return false;
+
+
+      if(!(type+description+status).equals
+         (sf.type+sf.description+sf.status))
+        return false;
+
+      return true;
     }
 
+
     public int getPosition()
     {
       return position;
@@ -134,4 +158,15 @@ public class SequenceFeature
       this.status = status;
     }
 
+    public String getFeatureGroup()
+    {
+      return featureGroup;
+    }
+
+    public void setFeatureGroup(String featureGroup)
+    {
+      this.featureGroup = featureGroup;
+    }
+
+
 }