X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceGroup.java;h=2870a2c8a4a5c7b23c7e56ee8ddaea3f8ef80bf2;hb=494a321d41897be1492b973fdb37fa4ccb0ec94e;hp=98fd8f26ad57b19977540567a0ed1e1a3a04168a;hpb=1c757dc1e6ee864277825c1ebd9c6a9fbe0da7b2;p=jalview.git

diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java
index 98fd8f2..2870a2c 100755
--- a/src/jalview/datamodel/SequenceGroup.java
+++ b/src/jalview/datamodel/SequenceGroup.java
@@ -22,7 +22,6 @@ package jalview.datamodel;
 
 import jalview.analysis.AAFrequency;
 import jalview.analysis.Conservation;
-import jalview.analysis.Profile;
 import jalview.schemes.ColourSchemeI;
 
 import java.awt.Color;
@@ -528,7 +527,7 @@ public class SequenceGroup implements AnnotatedCollectionI
     boolean upd = false;
     try
     {
-      Profile[] cnsns = AAFrequency.calculate(sequences, startRes,
+      ProfileI[] cnsns = AAFrequency.calculate(sequences, startRes,
               endRes + 1, showSequenceLogo);
       if (consensus != null)
       {
@@ -600,9 +599,9 @@ public class SequenceGroup implements AnnotatedCollectionI
     c.completeAnnotations(conservation, null, startRes, endRes + 1);
   }
 
-  public Profile[] consensusData = null;
+  public ProfileI[] consensusData = null;
 
-  private void _updateConsensusRow(Profile[] cnsns, long nseq)
+  private void _updateConsensusRow(ProfileI[] cnsns, long nseq)
   {
     if (consensus == null)
     {