X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceGroup.java;h=6bee4167fa15f0f8bba1dbbc0b4e5cfdeaf4b499;hb=a822fc744dcc06e6a8d2399218da0d0dfd56cf2b;hp=ba17cc95431aed5f2959623123972becdc67c970;hpb=cb7c9583bac57478d63abcbba3bd41460faa50a1;p=jalview.git

diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java
index ba17cc9..6bee416 100755
--- a/src/jalview/datamodel/SequenceGroup.java
+++ b/src/jalview/datamodel/SequenceGroup.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -91,6 +91,11 @@ public class SequenceGroup
    * consensus calculation property
    */
   private boolean showSequenceLogo = false;
+  /**
+   * flag indicating if logo should be rendered normalised
+   */
+  private boolean normaliseSequenceLogo;
+
 
   /**
    * @return the includeAllConsSymbols
@@ -1167,4 +1172,17 @@ public class SequenceGroup
   {
     return showConsensusHistogram;
   }
+
+  /**
+   * set flag indicating if logo should be normalised when rendered
+   * @param norm
+   */
+  public void setNormaliseSequenceLogo(boolean norm)
+  {
+    normaliseSequenceLogo=norm;
+  }
+  public boolean isNormaliseSequenceLogo()
+  {
+    return normaliseSequenceLogo;
+  }
 }