X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceGroup.java;h=a8b0ace9188402e8d4be1af115af124d48f459cb;hb=a82fbafb34572f4897f4ae2b57444f772f4a7a8b;hp=1df45a2b2ce02af19d24f98b363cbbbcae28f42a;hpb=f2221ba0c23dccdb121fe32594f050d919b11d88;p=jalview.git

diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java
index 1df45a2..a8b0ace 100755
--- a/src/jalview/datamodel/SequenceGroup.java
+++ b/src/jalview/datamodel/SequenceGroup.java
@@ -1209,11 +1209,15 @@ public class SequenceGroup implements AnnotatedCollectionI
     ArrayList<AlignmentAnnotation> annot = new ArrayList<AlignmentAnnotation>();
     for (SequenceI seq : (Vector<SequenceI>) sequences)
     {
-      for (AlignmentAnnotation al : seq.getAnnotation())
+      AlignmentAnnotation[] aa = seq.getAnnotation();
+      if (aa != null)
       {
-        if (al.groupRef == this)
+        for (AlignmentAnnotation al : aa)
         {
-          annot.add(al);
+          if (al.groupRef == this)
+          {
+            annot.add(al);
+          }
         }
       }
     }