X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceGroup.java;h=cc70e256f58f509d4484555ad21bbc8db19d30ca;hb=16359e92bebc20edafc4958b7b580c8ceedd4d37;hp=34392487f7e101c6a1e75e9d9ae6a00994b53eb6;hpb=7f61a28aad5fe2ef3df8aa4024ea3e7d8fbe1548;p=jalview.git diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java index 3439248..cc70e25 100755 --- a/src/jalview/datamodel/SequenceGroup.java +++ b/src/jalview/datamodel/SequenceGroup.java @@ -20,6 +20,11 @@ */ package jalview.datamodel; +import jalview.analysis.AAFrequency; +import jalview.analysis.Conservation; +import jalview.schemes.ColourSchemeI; +import jalview.schemes.ResidueProperties; + import java.awt.Color; import java.util.ArrayList; import java.util.Hashtable; @@ -27,11 +32,6 @@ import java.util.List; import java.util.Map; import java.util.Vector; -import jalview.analysis.AAFrequency; -import jalview.analysis.Conservation; -import jalview.schemes.ColourSchemeI; -import jalview.schemes.ResidueProperties; - /** * Collects a set contiguous ranges on a set of sequences * @@ -613,13 +613,13 @@ public class SequenceGroup implements AnnotatedCollectionI { synchronized (sequences) { - if (sequences.contains(s)) - { - deleteSequence(s, recalc); - } - else - { - addSequence(s, recalc); + if (sequences.contains(s)) + { + deleteSequence(s, recalc); + } + else + { + addSequence(s, recalc); } } } @@ -775,8 +775,9 @@ public class SequenceGroup implements AnnotatedCollectionI synchronized (sequences) { // MC This needs to get reset when characters are inserted and deleted - boolean first=true; - for (SequenceI seq:sequences) { + boolean first = true; + for (SequenceI seq : sequences) + { if (first || seq.getLength() > width) { width = seq.getLength();