X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceI.java;h=013897d14a079e0309b50b7d4846a169dc4ef349;hb=fbf6a124e2ffe81bcde747fda6f004748eb3b479;hp=5e2355d026c5a7511eabf808ac747ff8da25faaa;hpb=2d241446c80365862d31e76f2ecccaab33a1547f;p=jalview.git

diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index 5e2355d..013897d 100755
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -25,7 +25,6 @@ import jalview.datamodel.features.SequenceFeaturesI;
 import jalview.util.MapList;
 import jalview.ws.params.InvalidArgumentException;
 
-import java.awt.Color;
 import java.util.BitSet;
 import java.util.Iterator;
 import java.util.List;
@@ -585,11 +584,37 @@ public interface SequenceI extends ASequenceI
    */
   public int firstResidueOutsideIterator(Iterator<int[]> it);
 
-  public Color getColor(int i);
+  /**
+   * @author Bob Hanson 2019.07.30
+   * 
+   * get a 4-byte color, with caching
+   * 
+   */
+  public int getColor(int i);
 
-  public Color setColor(int i, Color c);
+  /**
+   * @author Bob Hanson 2019.07.30
+   * 
+   * set a 4-byte color, with caching
+   * 
+   */
+  public int setColor(int i, int argb);
 
+  /**
+   * @author Bob Hanson 2019.07.30
+   * 
+   * allows resetting the color cache
+   * 
+   */
   public void resetColors();
 
+  /**
+   * @author Bob Hanson 2019.07.30
+   * 
+   * allows passing the result ArrayList as a parameter to avoid unnecessary construction
+   * 
+   */
+  void findFeatures(int column, String type, List<SequenceFeature> result);
+
 }