X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceI.java;h=2e1daa3976970a15875c47eba74402aba7192e9b;hb=19c22459dca6c69d6f1fd0eed029c01e21c99854;hp=34dbab706aa5c944edbbb28b4b1616bebc19d34b;hpb=0eda79421bb03c19e3b74c4b83b1644ca12ea66c;p=jalview.git

diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index 34dbab7..2e1daa3 100755
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -415,7 +415,7 @@ public interface SequenceI extends ASequenceI, ContactMapHolderI
   /**
    * Derive a sequence (using this one's dataset or as the dataset)
    * 
-   * @return duplicate sequence with valid dataset sequence
+   * @return duplicate sequence and any annotation present with valid dataset sequence
    */
   public SequenceI deriveSequence();
 
@@ -596,4 +596,7 @@ public interface SequenceI extends ASequenceI, ContactMapHolderI
    */
   public int firstResidueOutsideIterator(Iterator<int[]> it);
 
+  public void addContactListFor(AlignmentAnnotation annotation,
+          ContactMatrixI cm);
+
 }