X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceI.java;h=4887ae58441379c1b8561c9b74147c62660a8b34;hb=08044f16da407871ea84ccbfbc09e34cceb74080;hp=b7c919782d34612c66cd1ebe14331ae12e433e17;hpb=efc31b4a8d5cee63555586804a2b79c06bdb5a14;p=jalview.git

diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index b7c9197..4887ae5 100755
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -45,6 +45,7 @@ public interface SequenceI
      */
     public String getName();
 
+    public String getShortName();
     /**
      * DOCUMENT ME!
      *
@@ -64,7 +65,7 @@ public interface SequenceI
      *
      * @return DOCUMENT ME!
      */
-    public String getDisplayId();
+    public String getDisplayId(boolean dbref, boolean jvsuffix);
 
     /**
      * DOCUMENT ME!
@@ -224,12 +225,30 @@ public interface SequenceI
      *
      * @param id DOCUMENT ME!
      */
-    public void setPDBId(String id);
+    public void setPDBId(Vector ids);
 
     /**
      * DOCUMENT ME!
      *
      * @return DOCUMENT ME!
      */
-    public String getPDBId();
+    public Vector getPDBId();
+
+    public void addPDBId(PDBEntry entry);
+
+    public String getVamsasId();
+
+    public void setVamsasId(String id);
+
+    public void setDBRef(Vector dbs);
+
+    public Vector getDBRef();
+
+    public void addDBRef(DBRefEntry entry);
+
+    public void addSequenceFeature(SequenceFeature sf);
+
+    public void setDatasetSequence(SequenceI seq);
+
+    public SequenceI getDatasetSequence();
 }