X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceI.java;h=55215a6770558f9a77599fc9be18b298f22ba041;hb=refs%2Fheads%2Fj2s%2Fdevelop-bh;hp=38ae3721db1e9ef8715feea6694dc2e14461a0cd;hpb=70f9c4700f20a8fa57ed7eb974277d8bad0723c2;p=jalview.git

diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index 38ae372..55215a6 100755
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -20,18 +20,21 @@
  */
 package jalview.datamodel;
 
+import jalview.jsdev.api.VarnaRNA;
+
 import java.util.List;
 import java.util.Vector;
 
-import fr.orsay.lri.varna.models.rna.RNA;
+//import fr.orsay.lri.varna.models.rna.RNA;
 
 /**
- * DOCUMENT ME!
+ * Methods for manipulating a sequence, its metadata and related annotation in
+ * an alignment or dataset.
  * 
  * @author $author$
  * @version $Revision$
  */
-public interface SequenceI
+public interface SequenceI extends ASequenceI
 {
   /**
    * Set the display name for the sequence
@@ -405,13 +408,13 @@ public interface SequenceI
    * @return The RNA of the sequence in the alignment
    */
 
-  public RNA getRNA();
+  public VarnaRNA getRNA();
 
   /**
    * @param rna
    *          The RNA.
    */
-  public void setRNA(RNA rna);
+  public void setRNA(VarnaRNA rna);
 
   /**
    *