X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceI.java;h=9751657e15efe80520b36f3896b58f26c515253a;hb=d71500a42803f307500c16250b40f0fc31e74aad;hp=64a57bae376b10bbfbdf36ed1d56233348679118;hpb=dac9672dba85c9bb2d7b7313e015d7561f252fe1;p=jalview.git

diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index 64a57ba..9751657 100755
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -134,12 +134,13 @@ public interface SequenceI
   public char[] getSequence(int start, int end);
 
   /**
-   * create a new sequence object from start to end of this sequence
+   * create a new sequence object with a subsequence of this one but sharing the
+   * same dataset sequence
    * 
    * @param start
-   *          int index for start position
+   *          int index for start position (base 0, inclusive)
    * @param end
-   *          int index for end position
+   *          int index for end position (base 0, exclusive)
    * 
    * @return SequenceI
    * @note implementations may use getSequence to get the sequence data