X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceI.java;h=ea49f6809ded43338c41cfb22260c4757f3d63b6;hb=d6e1bbede5adc04f34c969213ac6a4c6d9e5d34a;hp=21f7cc4890acebc0c472c4464b2b97eab917b1af;hpb=68b63b7225615d09b8b870681fd59f11a0167fe7;p=jalview.git

diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index 21f7cc4..ea49f68 100755
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -183,14 +183,6 @@ public interface SequenceI
      */
     public void insertCharAt(int i, char c);
 
-    /**
-     * DOCUMENT ME!
-     *
-     * @param i DOCUMENT ME!
-     * @param c DOCUMENT ME!
-     * @param chop DOCUMENT ME!
-     */
-    public void insertCharAt(int i, char c, boolean chop);
 
     /**
      * DOCUMENT ME!
@@ -211,14 +203,14 @@ public interface SequenceI
      *
      * @return DOCUMENT ME!
      */
-    public Vector getSequenceFeatures();
+    public SequenceFeature[] getSequenceFeatures();
 
     /**
      * DOCUMENT ME!
      *
      * @param v DOCUMENT ME!
      */
-    public void setSequenceFeatures(Vector v);
+    public void setSequenceFeatures(SequenceFeature [] features);
 
     /**
      * DOCUMENT ME!
@@ -256,4 +248,14 @@ public interface SequenceI
 
     public void addAlignmentAnnotation(AlignmentAnnotation annotation);
 
+    public SequenceGroup getHiddenSequences();
+
+    public void addHiddenSequence(SequenceI seq);
+
+    public void showHiddenSequence(SequenceI seq);
+
+    public void changeCase(boolean toUpper, int start, int end);
+
+    public void toggleCase(int start, int end);
+
 }