X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceI.java;h=f16c009d1e7a1c848a5a4ca14fdf140431e422a8;hb=588042b69abf8e60bcc950b24c283933c7dd422f;hp=9c2ab48aa3ec22d23bb0cb777317c0c57c9c2c60;hpb=5cd8e373c75fb348ecda4d94d8a46468fb92756d;p=jalview.git

diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index 9c2ab48..f16c009 100755
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -16,62 +16,67 @@
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
 */
-
 package jalview.datamodel;
 
 import jalview.jbgui.*;
+
 import java.awt.*;
 
 import java.util.Vector;
 
+
 public interface SequenceI {
-  public void        setName(String name);
-  public String      getName();
+    public void setName(String name);
+
+    public String getName();
+
+    public void setStart(int start);
+
+    public int getStart();
+
+    public String getDisplayId();
 
-  public void        setStart(int start);
-  public int         getStart();
+    public void setEnd(int end);
 
-  public String      getDisplayId();
+    public int getEnd();
 
-  public void        setEnd(int end);
-  public int         getEnd();
+    public int getLength();
 
-  public int         getLength();
+    public void setSequence(String sequence);
 
-  public void        setSequence(String sequence);
-  public String      getSequence();
-  public String      getSequence(int start,int end);
-  public char        getCharAt(int i);
+    public String getSequence();
 
-  public void        setDescription(String desc);
-  public String      getDescription();
+    public String getSequence(int start, int end);
 
-  public int         findIndex(int pos);
-  public int         findPosition(int i);
-  public int[]         gapMap();
-  public void       deleteChars(int i, int j);
-  public void       deleteCharAt(int i);
-  public void       insertCharAt(int i, char c);
-  public void       insertCharAt(int i,char c,boolean chop);
+    public char getCharAt(int i);
 
-  public void        setColor(Color c);
-  public Color       getColor();
+    public void setDescription(String desc);
 
-  public Vector     getSequenceFeatures();
-  public void       setSequenceFeatures(Vector v);
+    public String getDescription();
 
-  public void setPDBId(String id);
-  public String getPDBId();
+    public int findIndex(int pos);
 
-  }
+    public int findPosition(int i);
 
+    public int[] gapMap();
 
+    public void deleteChars(int i, int j);
 
+    public void deleteCharAt(int i);
 
+    public void insertCharAt(int i, char c);
 
+    public void insertCharAt(int i, char c, boolean chop);
 
+    public void setColor(Color c);
 
+    public Color getColor();
 
+    public Vector getSequenceFeatures();
 
+    public void setSequenceFeatures(Vector v);
 
+    public void setPDBId(String id);
 
+    public String getPDBId();
+}