X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FUniprotEntry.java;h=4cf0f13fc62c3dc5cb4f91ad05a79dbd33614274;hb=6323f1a33650360f131f25cf2797e5600ceee49f;hp=d2f4dcfee2d129d2503a3a3fb72f7809e7fd09d2;hpb=daeacba9a61069114333b550a987242d8e47e7f7;p=jalview.git
diff --git a/src/jalview/datamodel/UniprotEntry.java b/src/jalview/datamodel/UniprotEntry.java
index d2f4dcf..4cf0f13 100755
--- a/src/jalview/datamodel/UniprotEntry.java
+++ b/src/jalview/datamodel/UniprotEntry.java
@@ -1,92 +1,105 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
- */
-package jalview.datamodel;
-
-import java.util.*;
-
-public class UniprotEntry
-{
-
- UniprotSequence sequence;
- Vector name;
- Vector accession;
- Vector feature;
- Vector dbrefs;
- Vector proteinName;
-
- public void setAccession(Vector items)
- {
- accession = items;
- }
-
- public void setFeature(Vector items)
- {
- feature = items;
- }
-
- public Vector getFeature() {
- return feature;
- }
-
-
- public Vector getAccession()
- {
- return accession;
- }
-
- public void setProteinName(Vector items)
- {
- proteinName = items;
- }
-
- public Vector getProteinName()
- {
- return proteinName;
- }
-
- public void setName(Vector na)
- {
- name = na;
- }
- public Vector getName()
- {
- return name;
- }
-
- public UniprotSequence getUniprotSequence()
- {
- return sequence;
- }
-
- public void setUniprotSequence(UniprotSequence seq)
- {
- sequence = seq;
- }
-
- public Vector getDbReference()
- {
- return dbrefs;
- }
-
- public void setDbReference(Vector dbref)
- {
- this.dbrefs = dbref;
- }
-
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.datamodel;
+
+import java.util.Vector;
+
+/**
+ * Data model for an entry returned from a Uniprot query
+ *
+ * @see uniprot_mapping.xml
+ */
+public class UniprotEntry
+{
+
+ UniprotSequence sequence;
+
+ Vector name;
+
+ Vector accession;
+
+ Vector feature;
+
+ Vector dbrefs;
+
+ UniprotProteinName protName;
+
+ public void setAccession(Vector items)
+ {
+ accession = items;
+ }
+
+ public void setFeature(Vector items)
+ {
+ feature = items;
+ }
+
+ public Vector getFeature()
+ {
+ return feature;
+ }
+
+ public Vector getAccession()
+ {
+ return accession;
+ }
+
+ public void setProtein(UniprotProteinName names)
+ {
+ protName = names;
+ }
+
+ public UniprotProteinName getProtein()
+ {
+ return protName;
+ }
+
+ public void setName(Vector na)
+ {
+ name = na;
+ }
+
+ public Vector getName()
+ {
+ return name;
+ }
+
+ public UniprotSequence getUniprotSequence()
+ {
+ return sequence;
+ }
+
+ public void setUniprotSequence(UniprotSequence seq)
+ {
+ sequence = seq;
+ }
+
+ public Vector getDbReference()
+ {
+ return dbrefs;
+ }
+
+ public void setDbReference(Vector dbref)
+ {
+ this.dbrefs = dbref;
+ }
+
+}