X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FUniprotEntry.java;h=e9bf22166ef04979012f1603d9ac4b08985ff0bc;hb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;hp=90702a2a6ae50b0e383341bb1edf3ec54d7859d5;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git

diff --git a/src/jalview/datamodel/UniprotEntry.java b/src/jalview/datamodel/UniprotEntry.java
index 90702a2..e9bf221 100755
--- a/src/jalview/datamodel/UniprotEntry.java
+++ b/src/jalview/datamodel/UniprotEntry.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,39 +20,44 @@
  */
 package jalview.datamodel;
 
-import java.util.*;
+import java.util.Vector;
 
+/**
+ * Data model for an entry returned from a Uniprot query
+ * 
+ * @see uniprot_mapping.xml
+ */
 public class UniprotEntry
 {
 
   UniprotSequence sequence;
 
-  Vector name;
+  Vector<String> name;
 
-  Vector accession;
+  Vector<String> accession;
 
-  Vector feature;
+  Vector<SequenceFeature> feature;
 
-  Vector dbrefs;
+  Vector<PDBEntry> dbrefs;
 
   UniprotProteinName protName;
 
-  public void setAccession(Vector items)
+  public void setAccession(Vector<String> items)
   {
     accession = items;
   }
 
-  public void setFeature(Vector items)
+  public void setFeature(Vector<SequenceFeature> items)
   {
     feature = items;
   }
 
-  public Vector getFeature()
+  public Vector<SequenceFeature> getFeature()
   {
     return feature;
   }
 
-  public Vector getAccession()
+  public Vector<String> getAccession()
   {
     return accession;
   }
@@ -67,12 +72,12 @@ public class UniprotEntry
     return protName;
   }
 
-  public void setName(Vector na)
+  public void setName(Vector<String> na)
   {
     name = na;
   }
 
-  public Vector getName()
+  public Vector<String> getName()
   {
     return name;
   }
@@ -87,12 +92,12 @@ public class UniprotEntry
     sequence = seq;
   }
 
-  public Vector getDbReference()
+  public Vector<PDBEntry> getDbReference()
   {
     return dbrefs;
   }
 
-  public void setDbReference(Vector dbref)
+  public void setDbReference(Vector<PDBEntry> dbref)
   {
     this.dbrefs = dbref;
   }