X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2Fxdb%2Fembl%2FEmblEntry.java;h=4011e0bde4754324806dffcedeed1d73850e9f8f;hb=8d5a12d996b49525f7c5b83f3cc280aeb7c3fda7;hp=a1b8509e8ffb540e307f9659b0601753f275148f;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git diff --git a/src/jalview/datamodel/xdb/embl/EmblEntry.java b/src/jalview/datamodel/xdb/embl/EmblEntry.java index a1b8509..4011e0b 100644 --- a/src/jalview/datamodel/xdb/embl/EmblEntry.java +++ b/src/jalview/datamodel/xdb/embl/EmblEntry.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6) - * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) + * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle * * This file is part of Jalview. * @@ -585,10 +585,9 @@ public class EmblEntry { // extract proteins. product = new Sequence(prid, prseq, 1, prseq.length()); - product - .setDescription(((prname.length() == 0) ? "Protein Product from " - + sourceDb - : prname)); + product.setDescription(((prname.length() == 0) ? "Protein Product from " + + sourceDb + : prname)); if (!noPeptide) { // Protein is also added to vector of sequences returned @@ -713,16 +712,16 @@ public class EmblEntry } if (product != null) { - DBRefEntry pref = new DBRefEntry(ref.getSource(), ref - .getVersion(), ref.getAccessionId()); + DBRefEntry pref = new DBRefEntry(ref.getSource(), + ref.getVersion(), ref.getAccessionId()); pref.setMap(null); // reference is direct product.addDBRef(pref); // Add converse mapping reference if (map != null) { Mapping pmap = new Mapping(dna, map.getMap().getInverse()); - pref = new DBRefEntry(sourceDb, getVersion(), this - .getAccession()); + pref = new DBRefEntry(sourceDb, getVersion(), + this.getAccession()); pref.setMap(pmap); if (map.getTo() != null) {