X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2Fxdb%2Fembl%2FEmblEntry.java;h=5409d5b177066c80db96805504fd76308f129c5e;hb=0ac97c219bf88278f77306a5695e8bd9d9ca9179;hp=43581da872dc299bd0763e939ba8758e2eeab7ee;hpb=0159bc4ce82ec84c17f8df908ad2c97f8d6eceeb;p=jalview.git

diff --git a/src/jalview/datamodel/xdb/embl/EmblEntry.java b/src/jalview/datamodel/xdb/embl/EmblEntry.java
index 43581da..5409d5b 100644
--- a/src/jalview/datamodel/xdb/embl/EmblEntry.java
+++ b/src/jalview/datamodel/xdb/embl/EmblEntry.java
@@ -198,6 +198,7 @@ public class EmblEntry
     retrievedref.setMap(new Mapping(null, new int[] { 1, dna.getLength() },
             new int[] { 1, dna.getLength() }, 1, 1));
 
+
     /*
      * transform EMBL Database refs to canonical form
      */
@@ -282,13 +283,13 @@ public class EmblEntry
         }
         else if (qname.equals("protein_id"))
         {
-          prid = q.getValues()[0];
+          prid = q.getValues()[0].trim();
         }
         else if (qname.equals("codon_start"))
         {
           try
           {
-            codonStart = Integer.parseInt(q.getValues()[0]);
+            codonStart = Integer.parseInt(q.getValues()[0].trim());
           } catch (NumberFormatException e)
           {
             System.err.println("Invalid codon_start in XML for "
@@ -298,7 +299,7 @@ public class EmblEntry
         else if (qname.equals("product"))
         {
           // sometimes name is returned e.g. for V00488
-          prname = q.getValues()[0];
+          prname = q.getValues()[0].trim();
         }
         else
         {