X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2Fxdb%2Fembl%2FEmblSequence.java;h=92c424b8d96d1d3fd5b8aede03695d94df35326b;hb=37de9310bec3501cbc6381e0c3dcb282fcaad812;hp=6c583cfda6a960d32b0251470246b349c7b47234;hpb=a45774ee31d9f35d4eff46d54d7deab719afb092;p=jalview.git

diff --git a/src/jalview/datamodel/xdb/embl/EmblSequence.java b/src/jalview/datamodel/xdb/embl/EmblSequence.java
index 6c583cf..92c424b 100644
--- a/src/jalview/datamodel/xdb/embl/EmblSequence.java
+++ b/src/jalview/datamodel/xdb/embl/EmblSequence.java
@@ -1,30 +1,34 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.datamodel.xdb.embl;
 
+/**
+ * Data model for the sequence extracted from an EMBL query reply
+ * 
+ * @see embl_mapping.xml
+ */
 public class EmblSequence
 {
-  String version;
-
   String sequence;
 
-  String type;
-
   /**
    * @return the sequence
    */
@@ -39,40 +43,7 @@ public class EmblSequence
    */
   public void setSequence(String sequence)
   {
-    this.sequence = sequence;
-  }
-
-  /**
-   * @return the type
-   */
-  public String getType()
-  {
-    return type;
-  }
-
-  /**
-   * @param type
-   *          the type to set
-   */
-  public void setType(String type)
-  {
-    this.type = type;
-  }
-
-  /**
-   * @return the version
-   */
-  public String getVersion()
-  {
-    return version;
-  }
-
-  /**
-   * @param version
-   *          the version to set
-   */
-  public void setVersion(String version)
-  {
-    this.version = version;
+    // remove spaces introduced by unmarshalling of newline characters
+    this.sequence = sequence.replace(" ", "");
   }
 }