X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2Fxdb%2Fembl%2FEmblSequence.java;h=92c424b8d96d1d3fd5b8aede03695d94df35326b;hb=c14d9e8c9ff59de1857d4834ee70e80abf623415;hp=cccca2b8553bb4ed87717cc5abb10fef9c7b1b2f;hpb=ab43013b7e357b84b4abade0dba949668dfb2a0e;p=jalview.git

diff --git a/src/jalview/datamodel/xdb/embl/EmblSequence.java b/src/jalview/datamodel/xdb/embl/EmblSequence.java
index cccca2b..92c424b 100644
--- a/src/jalview/datamodel/xdb/embl/EmblSequence.java
+++ b/src/jalview/datamodel/xdb/embl/EmblSequence.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,14 +20,15 @@
  */
 package jalview.datamodel.xdb.embl;
 
+/**
+ * Data model for the sequence extracted from an EMBL query reply
+ * 
+ * @see embl_mapping.xml
+ */
 public class EmblSequence
 {
-  String version;
-
   String sequence;
 
-  String type;
-
   /**
    * @return the sequence
    */
@@ -42,40 +43,7 @@ public class EmblSequence
    */
   public void setSequence(String sequence)
   {
-    this.sequence = sequence;
-  }
-
-  /**
-   * @return the type
-   */
-  public String getType()
-  {
-    return type;
-  }
-
-  /**
-   * @param type
-   *          the type to set
-   */
-  public void setType(String type)
-  {
-    this.type = type;
-  }
-
-  /**
-   * @return the version
-   */
-  public String getVersion()
-  {
-    return version;
-  }
-
-  /**
-   * @param version
-   *          the version to set
-   */
-  public void setVersion(String version)
-  {
-    this.version = version;
+    // remove spaces introduced by unmarshalling of newline characters
+    this.sequence = sequence.replace(" ", "");
   }
 }