X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2Fxdb%2Funiprot%2FUniprotFeature.java;h=4c2ae24594514d94a32719b964e95e9fdb9e7b0b;hb=d8720fc191cba996c440171ef8e07462ef9f7035;hp=4a359ff20a321ea9d6e8e2079499523c4364a509;hpb=136c0793b90b72b928c4d77dc109dd5c644e00d3;p=jalview.git

diff --git a/src/jalview/datamodel/xdb/uniprot/UniprotFeature.java b/src/jalview/datamodel/xdb/uniprot/UniprotFeature.java
index 4a359ff..4c2ae24 100644
--- a/src/jalview/datamodel/xdb/uniprot/UniprotFeature.java
+++ b/src/jalview/datamodel/xdb/uniprot/UniprotFeature.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.datamodel.xdb.uniprot;
 
 /**
@@ -7,7 +27,11 @@ public class UniprotFeature
 {
   private String type;
 
-  private String description;
+  private String description = null;
+
+  private String original = null;
+
+  private String variation = null;
 
   private String status;
 
@@ -27,7 +51,19 @@ public class UniprotFeature
 
   public String getDescription()
   {
-    return description;
+    if (description == null && variation == null && original == null)
+    {
+      return null;
+    }
+    return (description == null ? "" : description)
+            + (variation != null
+                    ? (description != null ? " " : "") + "Variation: '"
+                            + variation + "'"
+                    : "")
+            + (original != null
+                    ? ((description != null || variation != null) ? " "
+                            : "") + "Original: '" + original + "'"
+                    : "");
   }
 
   public void setDescription(String d)
@@ -75,4 +111,24 @@ public class UniprotFeature
     this.begin = p;
     this.end = p;
   }
+
+  public String getOriginal()
+  {
+    return original;
+  }
+
+  public void setOriginal(String original)
+  {
+    this.original = original;
+  }
+
+  public String getVariation()
+  {
+    return variation;
+  }
+
+  public void setVariation(String variant)
+  {
+    this.variation = variant;
+  }
 }