X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Farchaeopteryx%2FArchaeopteryxInit.java;h=3bd9d1927b1294c35c0a03f0a279078905bdd874;hb=1b929b92d3e782165fb17776a6fadd8aa447c760;hp=8302140a56efc1ca22d6bae02af1d875d08ae4d4;hpb=7f2bb99cee53626f577b3f350137a6e6ea8cc5f6;p=jalview.git

diff --git a/src/jalview/ext/archaeopteryx/ArchaeopteryxInit.java b/src/jalview/ext/archaeopteryx/ArchaeopteryxInit.java
index 8302140..3bd9d19 100644
--- a/src/jalview/ext/archaeopteryx/ArchaeopteryxInit.java
+++ b/src/jalview/ext/archaeopteryx/ArchaeopteryxInit.java
@@ -13,7 +13,7 @@ public final class ArchaeopteryxInit
 {
   public static MainFrame createInstance(Phylogeny[] aptxTrees)
   {
-    return createAptxFrame(aptxTrees);
+    return createBoundAptxFrame(aptxTrees);
 
   }
 
@@ -21,24 +21,25 @@ public final class ArchaeopteryxInit
   {
     Phylogeny[] aptxTrees = { aptxTree }; // future possibility to load in
     // several trees simultaneously
-    return createAptxFrame(aptxTrees);
+    return createBoundAptxFrame(aptxTrees);
 
   }
 
   public static MainFrame createInstance(
           TreeBuilder calculatedTree)
   {
-    ArchaeopteryxTreeBuilder aptxTreeBuilder = new ArchaeopteryxTreeBuilder();
-    Phylogeny aptxTree = aptxTreeBuilder.buildAptxTree(calculatedTree);
+    ArchaeopteryxTreeConverter aptxTreeBuilder = new ArchaeopteryxTreeConverter(
+            calculatedTree);
+    Phylogeny aptxTree = aptxTreeBuilder.buildAptxTree();
     Phylogeny[] aptxTrees = { aptxTree }; // future possibility to load in
                                           // several trees simultaneously
 
-    return createAptxFrame(aptxTrees);
+    return createBoundAptxFrame(aptxTrees);
 
   }
 
 
-  private static MainFrame createAptxFrame(Phylogeny[] aptxTrees)
+  private static MainFrame createBoundAptxFrame(Phylogeny[] aptxTrees)
   {
     MainFrame aptxApp = Archaeopteryx.createApplication(aptxTrees,
             "_aptx_jalview_configuration_file", null);