X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Farchaeopteryx%2FLoadedTreeSequenceAssociation.java;h=0c830365dc1c937ede018d9c26919dc399ee9e22;hb=b39c593c3799dc8a2ec799ce015c86d201d43da7;hp=86f27d1247c52208efec061bcb7a6786a891db9a;hpb=a64970d2774d166ce34832c1dd4d91d55248b540;p=jalview.git

diff --git a/src/jalview/ext/archaeopteryx/LoadedTreeSequenceAssociation.java b/src/jalview/ext/archaeopteryx/LoadedTreeSequenceAssociation.java
index 86f27d1..0c83036 100644
--- a/src/jalview/ext/archaeopteryx/LoadedTreeSequenceAssociation.java
+++ b/src/jalview/ext/archaeopteryx/LoadedTreeSequenceAssociation.java
@@ -16,13 +16,13 @@ import org.forester.phylogeny.iterators.PhylogenyNodeIterator;
 public class LoadedTreeSequenceAssociation
         implements ExternalLoadedTreeAssociationI
 {
-  SequenceI[] alignSequences;
+  private SequenceI[] alignSequences;
 
-  Phylogeny tree;
+  private Phylogeny tree;
 
-  Map<SequenceI, PhylogenyNode> alignmentWithNodes;
+  private Map<SequenceI, PhylogenyNode> alignmentWithNodes;
 
-  Map<PhylogenyNode, SequenceI> nodesWithAlignment;
+  private Map<PhylogenyNode, SequenceI> nodesWithAlignment;
 
   public LoadedTreeSequenceAssociation(SequenceI[] alignmentSequences,
           Phylogeny aptxTree)