X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblCdna.java;h=856be744d8ea8637b28ea6d7654cfe81be33b31e;hb=deb6365c5607804ab43f8bb29e7d1a11f298789b;hp=028492e7da1b5b1405ebf303ae60f98c917d8183;hpb=b8058f3f849f44740a695c83e96bdca3a197af5c;p=jalview.git diff --git a/src/jalview/ext/ensembl/EnsemblCdna.java b/src/jalview/ext/ensembl/EnsemblCdna.java index 028492e..856be74 100644 --- a/src/jalview/ext/ensembl/EnsemblCdna.java +++ b/src/jalview/ext/ensembl/EnsemblCdna.java @@ -4,6 +4,7 @@ import jalview.datamodel.SequenceFeature; import jalview.io.gff.SequenceOntologyFactory; import jalview.io.gff.SequenceOntologyI; +import java.util.Arrays; import java.util.List; import com.stevesoft.pat.Regex; @@ -18,6 +19,9 @@ import com.stevesoft.pat.Regex; */ public class EnsemblCdna extends EnsemblSeqProxy { + private static final List CROSS_REFERENCES = Arrays + .asList(new String[] { "Uniprot/SWISSPROT", "Uniprot/SPTREMBL" }); + /* * accepts ENST or ENSTG with 11 digits * or ENSMUST or similar for other species @@ -113,7 +117,7 @@ public class EnsemblCdna extends EnsemblSeqProxy @Override protected List getCrossReferenceDatabases() { - return super.getCrossReferenceDatabases(); + return CROSS_REFERENCES; // 30/01/16 also found Vega_transcript, OTTT, ENS_LRG_transcript, UCSC, // HGNC_trans_name, RefSeq_mRNA, RefSeq_mRNA_predicted }