X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblCdna.java;h=e141db4b172d18876ba472a4eefc2baf788bdea2;hb=a61896507a80dd6dcafaee02a872678022afe943;hp=856be744d8ea8637b28ea6d7654cfe81be33b31e;hpb=908bf85e4afe1e303515797719df5dd8afec06e7;p=jalview.git diff --git a/src/jalview/ext/ensembl/EnsemblCdna.java b/src/jalview/ext/ensembl/EnsemblCdna.java index 856be74..e141db4 100644 --- a/src/jalview/ext/ensembl/EnsemblCdna.java +++ b/src/jalview/ext/ensembl/EnsemblCdna.java @@ -4,9 +4,6 @@ import jalview.datamodel.SequenceFeature; import jalview.io.gff.SequenceOntologyFactory; import jalview.io.gff.SequenceOntologyI; -import java.util.Arrays; -import java.util.List; - import com.stevesoft.pat.Regex; /** @@ -19,9 +16,6 @@ import com.stevesoft.pat.Regex; */ public class EnsemblCdna extends EnsemblSeqProxy { - private static final List CROSS_REFERENCES = Arrays - .asList(new String[] { "Uniprot/SWISSPROT", "Uniprot/SPTREMBL" }); - /* * accepts ENST or ENSTG with 11 digits * or ENSMUST or similar for other species @@ -114,12 +108,4 @@ public class EnsemblCdna extends EnsemblSeqProxy return false; } - @Override - protected List getCrossReferenceDatabases() - { - return CROSS_REFERENCES; - // 30/01/16 also found Vega_transcript, OTTT, ENS_LRG_transcript, UCSC, - // HGNC_trans_name, RefSeq_mRNA, RefSeq_mRNA_predicted - } - }