X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblCdna.java;h=f60125b94b97bdef9237ed8a57e017a463680d52;hb=4b3e12d9f3c2e2ad8a0317160881cef075690e97;hp=373286fb9f323d3ceaf819dbb9fd7df1d466d2f2;hpb=3cccac4697c371b1964236e17b532fd3d180e1c4;p=jalview.git

diff --git a/src/jalview/ext/ensembl/EnsemblCdna.java b/src/jalview/ext/ensembl/EnsemblCdna.java
index 373286f..f60125b 100644
--- a/src/jalview/ext/ensembl/EnsemblCdna.java
+++ b/src/jalview/ext/ensembl/EnsemblCdna.java
@@ -10,8 +10,12 @@ import com.stevesoft.pat.Regex;
 
 public class EnsemblCdna extends EnsemblSeqProxy
 {
+  // TODO modify to accept other species e.g. ENSMUSPnnn
+  private static final Regex ACCESSION_REGEX = new Regex(
+          "(ENST|ENSG|CCDS)[0-9.]{3,}$");
+  
   /*
-   * fetch exon features on genomic sequence (to identify the cdnaregions)
+   * fetch exon features on genomic sequence (to identify the cdna regions)
    * and cds and variation features (to retain)
    */
   private static final EnsemblFeatureType[] FEATURES_TO_FETCH = {
@@ -38,7 +42,7 @@ public class EnsemblCdna extends EnsemblSeqProxy
   @Override
   public Regex getAccessionValidator()
   {
-    return new Regex("((ENST|ENSG|CCDS)[0-9.]{3,})");
+    return ACCESSION_REGEX;
   }
 
   @Override