X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblGene.java;fp=src%2Fjalview%2Fext%2Fensembl%2FEnsemblGene.java;h=2d4d61abfa27a14aa4f5cb44946c3242b85e98dd;hb=19fe93b91d4c50834b1a7101da2b1c240c55ae84;hp=223e54ac964dd248aee388439208391864dd0fb8;hpb=a5ad4f49249c216517d76303c731a8ca0d1f0c55;p=jalview.git

diff --git a/src/jalview/ext/ensembl/EnsemblGene.java b/src/jalview/ext/ensembl/EnsemblGene.java
index 223e54a..2d4d61a 100644
--- a/src/jalview/ext/ensembl/EnsemblGene.java
+++ b/src/jalview/ext/ensembl/EnsemblGene.java
@@ -274,7 +274,8 @@ public class EnsemblGene extends EnsemblSeqProxy
      * (it is a sub-type of sequence_variant)    
      */
     String[] soTerms = new String[] {
-        SequenceOntologyI.NMD_TRANSCRIPT_VARIANT, SequenceOntologyI.EXON,
+        SequenceOntologyI.NMD_TRANSCRIPT_VARIANT,
+        SequenceOntologyI.TRANSCRIPT, SequenceOntologyI.EXON,
         SequenceOntologyI.CDS };
     List<SequenceFeature> sfs = gene.getFeatures().getFeaturesByOntology(
             soTerms);