X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblGene.java;fp=src%2Fjalview%2Fext%2Fensembl%2FEnsemblGene.java;h=ae85b453a1180397cd245bb46b85c29d8ed9c911;hb=d043ce47fc710d3eb2629ba926a8a7417bd67d8c;hp=e832eff3693d24879a6e7a3c9848ae4625dfd722;hpb=49db0dff1da16c3355b43a41498c1fc93ef47e91;p=jalview.git

diff --git a/src/jalview/ext/ensembl/EnsemblGene.java b/src/jalview/ext/ensembl/EnsemblGene.java
index e832eff..ae85b45 100644
--- a/src/jalview/ext/ensembl/EnsemblGene.java
+++ b/src/jalview/ext/ensembl/EnsemblGene.java
@@ -151,7 +151,7 @@ public class EnsemblGene extends EnsemblSeqProxy
       {
         continue;
       }
-      
+
       if (geneAlignment.getHeight() == 1)
       {
         // ensure id has 'correct' case for the Ensembl identifier
@@ -318,8 +318,8 @@ public class EnsemblGene extends EnsemblSeqProxy
         SequenceOntologyI.NMD_TRANSCRIPT_VARIANT,
         SequenceOntologyI.TRANSCRIPT, SequenceOntologyI.EXON,
         SequenceOntologyI.CDS };
-    List<SequenceFeature> sfs = gene.getFeatures().getFeaturesByOntology(
-            soTerms);
+    List<SequenceFeature> sfs = gene.getFeatures()
+            .getFeaturesByOntology(soTerms);
     for (SequenceFeature sf : sfs)
     {
       gene.deleteFeature(sf);
@@ -469,8 +469,9 @@ public class EnsemblGene extends EnsemblSeqProxy
       transcriptLoci.add(geneMapping.locateInTo(exon[0], exon[1]));
     }
 
-    List<int[]> transcriptRange = Arrays.asList(new int[] {
-        transcript.getStart(), transcript.getEnd() });
+    List<int[]> transcriptRange = Arrays
+            .asList(new int[]
+            { transcript.getStart(), transcript.getEnd() });
     MapList mapList = new MapList(transcriptRange, transcriptLoci, 1, 1);
 
     transcript.setGeneLoci(loci.getSpeciesId(), loci.getAssemblyId(),