X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblGene.java;h=37c787b37222a61a29e186554ec346ecbe22bc88;hb=67affee2e65ca942447570c35526c04d64f41fe1;hp=24e3e955fe442972c96f99ae6257cfaa0fecfa14;hpb=604cbee405a837565ba1a74aa9bddd62aed685ab;p=jalview.git

diff --git a/src/jalview/ext/ensembl/EnsemblGene.java b/src/jalview/ext/ensembl/EnsemblGene.java
index 24e3e95..37c787b 100644
--- a/src/jalview/ext/ensembl/EnsemblGene.java
+++ b/src/jalview/ext/ensembl/EnsemblGene.java
@@ -190,7 +190,22 @@ public class EnsemblGene extends EnsemblSeqProxy
           geneIds.add(geneId);
         }
       }
+      else if (isProteinIdentifier(acc))
+      {
+        String tscriptId = new EnsemblLookup(getDomain()).getParent(acc);
+        if (tscriptId != null)
+        {
+          String geneId = new EnsemblLookup(getDomain())
+                  .getParent(tscriptId);
 
+          if (geneId != null && !geneIds.contains(geneId))
+          {
+            geneIds.add(geneId);
+          }
+        }
+        // NOTE - acc is lost if it resembles an ENS.+ ID but isn't actually
+        // resolving to one... e.g. ENSMICP00000009241
+      }
       /*
        * if given a gene or other external name, lookup and fetch 
        * the corresponding gene for all model organisms