X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblGenome.java;h=20987e188ab2ffbe47bc9abb9ab466cf37de8791;hb=70ad0f1ae40759c435ead9d732983aeb091dfd0e;hp=6bbc3e94fbf525953442085ee5e7b26558413508;hpb=e96f5e8ce137e879dd4b4f37fb5c4d134e2778e2;p=jalview.git diff --git a/src/jalview/ext/ensembl/EnsemblGenome.java b/src/jalview/ext/ensembl/EnsemblGenome.java index 6bbc3e9..20987e1 100644 --- a/src/jalview/ext/ensembl/EnsemblGenome.java +++ b/src/jalview/ext/ensembl/EnsemblGenome.java @@ -2,6 +2,14 @@ package jalview.ext.ensembl; import jalview.datamodel.SequenceFeature; +/** + * A client to fetch genomic sequence from Ensembl + * + * TODO: not currently used - delete? + * + * @author gmcarstairs + * + */ public class EnsemblGenome extends EnsemblSeqProxy { /* @@ -12,15 +20,28 @@ public class EnsemblGenome extends EnsemblSeqProxy EnsemblFeatureType.transcript, EnsemblFeatureType.exon, EnsemblFeatureType.cds, EnsemblFeatureType.variation }; + /** + * Default constructor (to use rest.ensembl.org) + */ public EnsemblGenome() { super(); } + /** + * Constructor given the target domain to fetch data from + * + * @param d + */ + public EnsemblGenome(String d) + { + super(d); + } + @Override public String getDbName() { - return "ENSEMBL (Genome)"; + return "ENSEMBL (Genomic)"; } @Override