X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblGenome.java;h=20987e188ab2ffbe47bc9abb9ab466cf37de8791;hb=77a7aa4d0c1be9ac6d0e6195a3b0ac3cd73f2875;hp=e977e62d512038187c09f6780b4c17ac7a47f674;hpb=46b2bc114452c0e30463214b3e82eb0a5c98d23f;p=jalview.git diff --git a/src/jalview/ext/ensembl/EnsemblGenome.java b/src/jalview/ext/ensembl/EnsemblGenome.java index e977e62..20987e1 100644 --- a/src/jalview/ext/ensembl/EnsemblGenome.java +++ b/src/jalview/ext/ensembl/EnsemblGenome.java @@ -2,6 +2,14 @@ package jalview.ext.ensembl; import jalview.datamodel.SequenceFeature; +/** + * A client to fetch genomic sequence from Ensembl + * + * TODO: not currently used - delete? + * + * @author gmcarstairs + * + */ public class EnsemblGenome extends EnsemblSeqProxy { /* @@ -12,11 +20,24 @@ public class EnsemblGenome extends EnsemblSeqProxy EnsemblFeatureType.transcript, EnsemblFeatureType.exon, EnsemblFeatureType.cds, EnsemblFeatureType.variation }; + /** + * Default constructor (to use rest.ensembl.org) + */ public EnsemblGenome() { super(); } + /** + * Constructor given the target domain to fetch data from + * + * @param d + */ + public EnsemblGenome(String d) + { + super(d); + } + @Override public String getDbName() {