X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblGenomes.java;h=9fc6a53ef3912c1c15edc2a2a41e7ff8cf9efad2;hb=aab74f8748bf49bf6b17ba82f0bc5644d4dc2853;hp=ef46a5b1b8684a341521a1b853d44d2aed048714;hpb=604cbee405a837565ba1a74aa9bddd62aed685ab;p=jalview.git diff --git a/src/jalview/ext/ensembl/EnsemblGenomes.java b/src/jalview/ext/ensembl/EnsemblGenomes.java index ef46a5b..9fc6a53 100644 --- a/src/jalview/ext/ensembl/EnsemblGenomes.java +++ b/src/jalview/ext/ensembl/EnsemblGenomes.java @@ -20,6 +20,9 @@ */ package jalview.ext.ensembl; +import jalview.bin.Cache; +import jalview.datamodel.DBRefSource; + /** * A class to behave much like EnsemblGene but referencing the ensemblgenomes * domain and data @@ -35,31 +38,30 @@ public class EnsemblGenomes extends EnsemblGene */ public EnsemblGenomes() { - super(ENSEMBL_GENOMES_REST); - } - - @Override - public boolean isGeneIdentifier(String query) - { - return true; + super(); + setDomain(Cache.getDefault(ENSEMBL_GENOMES_BASEURL, + DEFAULT_ENSEMBL_GENOMES_BASEURL)); } @Override public String getDbName() { - return "EnsemblGenomes"; + return DBRefSource.ENSEMBLGENOMES; } @Override public String getTestQuery() { - return "DDB_G0283883"; + /* + * Salmonella gene, Uniprot Q8Z9G6, EMBLCDS CAD01290 + */ + return "CAD01290"; } @Override public String getDbSource() { - return "EnsemblGenomes"; + return DBRefSource.ENSEMBLGENOMES; } }