X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblGenomes.java;h=9fc6a53ef3912c1c15edc2a2a41e7ff8cf9efad2;hb=e42eed3a0089a8a064560df4cf17a5021fd1e16a;hp=5a390f2c8e4b9c6840f4e18bf5dc9adfa77ed6ce;hpb=f23f5cefe9c66bfa8b877c707d25862cabba3ddf;p=jalview.git diff --git a/src/jalview/ext/ensembl/EnsemblGenomes.java b/src/jalview/ext/ensembl/EnsemblGenomes.java index 5a390f2..9fc6a53 100644 --- a/src/jalview/ext/ensembl/EnsemblGenomes.java +++ b/src/jalview/ext/ensembl/EnsemblGenomes.java @@ -20,6 +20,9 @@ */ package jalview.ext.ensembl; +import jalview.bin.Cache; +import jalview.datamodel.DBRefSource; + /** * A class to behave much like EnsemblGene but referencing the ensemblgenomes * domain and data @@ -35,25 +38,30 @@ public class EnsemblGenomes extends EnsemblGene */ public EnsemblGenomes() { - super(ENSEMBL_GENOMES_REST); + super(); + setDomain(Cache.getDefault(ENSEMBL_GENOMES_BASEURL, + DEFAULT_ENSEMBL_GENOMES_BASEURL)); } @Override public String getDbName() { - return "EnsemblGenomes"; + return DBRefSource.ENSEMBLGENOMES; } @Override public String getTestQuery() { - return "DDB_G0283883"; + /* + * Salmonella gene, Uniprot Q8Z9G6, EMBLCDS CAD01290 + */ + return "CAD01290"; } @Override public String getDbSource() { - return "EnsemblGenomes"; + return DBRefSource.ENSEMBLGENOMES; } }