X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblSeqProxy.java;h=7a37c8a19fa9cee28f8e2fab63d39e3f6ff403ef;hb=cd268aa5e06c4327489110c59c987e3e071eb038;hp=7b448fd8a6389becba113ec2e2b40d6bb997b959;hpb=77bcd1f60d9c26328d8859445f4225cd0ef571a9;p=jalview.git diff --git a/src/jalview/ext/ensembl/EnsemblSeqProxy.java b/src/jalview/ext/ensembl/EnsemblSeqProxy.java index 7b448fd..7a37c8a 100644 --- a/src/jalview/ext/ensembl/EnsemblSeqProxy.java +++ b/src/jalview/ext/ensembl/EnsemblSeqProxy.java @@ -62,8 +62,6 @@ import org.json.simple.parser.ParseException; */ public abstract class EnsemblSeqProxy extends EnsemblRestClient { - protected static final String NAME = "Name"; - protected static final String DESCRIPTION = "description"; /* @@ -867,9 +865,8 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient protected boolean featureMayBelong(SequenceFeature sf, String identifier) { String parent = (String) sf.getValue(PARENT); - // using contains to allow for prefix "gene:", "transcript:" etc if (parent != null - && !parent.toUpperCase().contains(identifier.toUpperCase())) + && !parent.equalsIgnoreCase(identifier)) { // this genomic feature belongs to a different transcript return false; @@ -877,6 +874,9 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient return true; } + /** + * Answers a short description of the sequence fetcher + */ @Override public String getDescription() {