X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblSeqProxy.java;h=c86469f7b5ab393157107bd323bf0d8000bae725;hb=1c6ddae580d69eb0fa5b4291ba84fd6ba9b83621;hp=fb81e66c963479ff361c65c4b68a91350d893bd0;hpb=0ae70dbd95d7eb6932c1ec1252628f58f0989668;p=jalview.git diff --git a/src/jalview/ext/ensembl/EnsemblSeqProxy.java b/src/jalview/ext/ensembl/EnsemblSeqProxy.java index fb81e66..c86469f 100644 --- a/src/jalview/ext/ensembl/EnsemblSeqProxy.java +++ b/src/jalview/ext/ensembl/EnsemblSeqProxy.java @@ -280,8 +280,8 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient ds.setSourceDBRef(proteinSeq.getSourceDBRef()); Mapping map = new Mapping(ds, mapList); - DBRefEntry dbr = new DBRefEntry(getDbSource(), getDbVersion(), - proteinSeq.getName(), map); + DBRefEntry dbr = new DBRefEntry(getDbSource(), + getEnsemblDataVersion(), proteinSeq.getName(), map); querySeq.getDatasetSequence().addDBRef(dbr); /* @@ -327,7 +327,8 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient /* * and add a reference to itself */ - DBRefEntry self = new DBRefEntry(getDbSource(), "0", seq.getName()); + DBRefEntry self = new DBRefEntry(getDbSource(), + getEnsemblDataVersion(), seq.getName()); seq.addDBRef(self); } @@ -386,7 +387,8 @@ public abstract class EnsemblSeqProxy extends EnsemblRestClient if (ids.contains(name) || ids.contains(name.replace("ENSP", "ENST"))) { - DBRefUtils.parseToDbRef(sq, DBRefSource.ENSEMBL, "0", name); + DBRefUtils.parseToDbRef(sq, getDbSource(), + getEnsemblDataVersion(), name); } } if (alignment == null)