X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblSequenceFetcher.java;h=7454eb627cff9b5bbb76910c3083b1a7e753840a;hb=9d80cca5113c0411aa06559d4bd3f86454459ce7;hp=8296985d131b585d252a6776f3db7798681bdb6f;hpb=9518457659e772f54c2d12f35b89a8c1722a9343;p=jalview.git diff --git a/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java b/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java index 8296985..7454eb6 100644 --- a/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java +++ b/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java @@ -42,7 +42,8 @@ abstract class EnsemblSequenceFetcher extends DbSourceProxyImpl // domain properties default values: protected static final String DEFAULT_ENSEMBL_BASEURL = "https://rest.ensembl.org"; - protected static final String DEFAULT_ENSEMBL_GENOMES_BASEURL = "https://rest.ensemblgenomes.org"; + // ensemblgenomes REST service merged to ensembl 9th April 2019 + protected static final String DEFAULT_ENSEMBL_GENOMES_BASEURL = DEFAULT_ENSEMBL_BASEURL; /* * accepts ENSG/T/E/P with 11 digits @@ -102,10 +103,6 @@ abstract class EnsemblSequenceFetcher extends DbSourceProxyImpl public String getDbSource() { // NB ensure Uniprot xrefs are canonicalised from "Ensembl" to "ENSEMBL" - if (ensemblGenomesDomain.equals(getDomain())) - { - return DBRefSource.ENSEMBLGENOMES; - } return DBRefSource.ENSEMBL; }