X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblSequenceFetcher.java;h=9e3fef4bac6537b186f512a57a5f987fe53a1cfa;hb=8ca1ac83b31ae44e8025b246800a4671f44cbb0c;hp=f16dda6cf598e98ad1d169b29b4b2dcb7ba4b177;hpb=94814d1d6b542c2a4f4e75787f30562716269fdb;p=jalview.git diff --git a/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java b/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java index f16dda6..9e3fef4 100644 --- a/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java +++ b/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java @@ -39,9 +39,9 @@ abstract class EnsemblSequenceFetcher extends DbSourceProxyImpl protected static final String ENSEMBL_GENOMES_BASEURL = "ENSEMBL_GENOMES_BASEURL"; // domain properties default values: - protected static final String DEFAULT_ENSEMBL_BASEURL = "http://rest.ensembl.org"; + protected static final String DEFAULT_ENSEMBL_BASEURL = "https://rest.ensembl.org"; - protected static final String DEFAULT_ENSEMBL_GENOMES_BASEURL = "http://rest.ensemblgenomes.org"; + protected static final String DEFAULT_ENSEMBL_GENOMES_BASEURL = "https://rest.ensemblgenomes.org"; /* * accepts ENSG/T/E/P with 11 digits @@ -56,6 +56,18 @@ abstract class EnsemblSequenceFetcher extends DbSourceProxyImpl protected final String ensemblDomain; + protected static final String OBJECT_TYPE_TRANSLATION = "Translation"; + + protected static final String OBJECT_TYPE_TRANSCRIPT = "Transcript"; + + protected static final String OBJECT_TYPE_GENE = "Gene"; + + protected static final String PARENT = "Parent"; + + protected static final String JSON_ID = "id"; + + protected static final String OBJECT_TYPE = "object_type"; + /* * possible values for the 'feature' parameter of the /overlap REST service * @see http://rest.ensembl.org/documentation/info/overlap_id