X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fensembl%2FEnsemblSequenceFetcher.java;h=c4abb20db32f0c5ca6bc13bd5fecf738edc7f02f;hb=e2a5f8d1d01156048d04a0dd53777f78de9b86eb;hp=bd6335a9f93a042e9308b1e0efe5877ef76ef5ea;hpb=604cbee405a837565ba1a74aa9bddd62aed685ab;p=jalview.git

diff --git a/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java b/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java
index bd6335a..c4abb20 100644
--- a/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java
+++ b/src/jalview/ext/ensembl/EnsemblSequenceFetcher.java
@@ -38,12 +38,25 @@ abstract class EnsemblSequenceFetcher extends DbSourceProxyImpl
    * or CCDSnnnnn.nn with at least 3 digits
    */
   private static final Regex ACCESSION_REGEX = new Regex(
-          "(ENS([A-Z]{3}|)[GTEP]{1}[0-9]{11}$)" + "|" + "(CCDS[0-9.]{3,}$)");
+          "(ENS([A-Z]{3}|)[GTEP]{1}[0-9]{11}$)" + "|"
+                  + "(CCDS[0-9.]{3,}$)");
 
   protected static final String ENSEMBL_GENOMES_REST = "http://rest.ensemblgenomes.org";
 
   protected static final String ENSEMBL_REST = "http://rest.ensembl.org";
 
+  protected static final String OBJECT_TYPE_TRANSLATION = "Translation";
+
+  protected static final String OBJECT_TYPE_TRANSCRIPT = "Transcript";
+
+  protected static final String OBJECT_TYPE_GENE = "Gene";
+
+  protected static final String PARENT = "Parent";
+
+  protected static final String ID = "id";
+
+  protected static final String OBJECT_TYPE = "object_type";
+
   /*
    * possible values for the 'feature' parameter of the /overlap REST service
    * @see http://rest.ensembl.org/documentation/info/overlap_id