X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fhtsjdk%2FHtsContigDb.java;fp=src%2Fjalview%2Fext%2Fhtsjdk%2FHtsContigDb.java;h=667e5678753a1ebb736e6446757a6d8f70c54d8c;hb=853624fb32058cccc544ae7d13af6ad4b0800b6c;hp=f3b5098cb7c4fd88610124fb110a714eded7fe9a;hpb=02d6aa2077a261d41db77a0158f2b4b779a36398;p=jalview.git

diff --git a/src/jalview/ext/htsjdk/HtsContigDb.java b/src/jalview/ext/htsjdk/HtsContigDb.java
index f3b5098..667e567 100644
--- a/src/jalview/ext/htsjdk/HtsContigDb.java
+++ b/src/jalview/ext/htsjdk/HtsContigDb.java
@@ -59,18 +59,21 @@ public class HtsContigDb
 
   }
 
-
   SAMSequenceDictionary rrefDict = null;
-  private ReferenceSequenceFile initSequenceDictionaryFor(File dbLocation2) throws Exception
+
+  private ReferenceSequenceFile initSequenceDictionaryFor(File dbLocation2)
+          throws Exception
   {
     rrefDict = getDictionary(dbLocation2, true);
     if (rrefDict != null)
     {
-      ReferenceSequenceFile rrefFile = ReferenceSequenceFileFactory.getReferenceSequenceFile(dbLocation2, true);
+      ReferenceSequenceFile rrefFile = ReferenceSequenceFileFactory
+              .getReferenceSequenceFile(dbLocation2, true);
       return rrefFile;
     }
     return null;
   }
+
   /**
    * code below hacked out from picard ----
    * 
@@ -79,7 +82,6 @@ public class HtsContigDb
    * broadinstitute/picard/commit/270580d3e28123496576f0b91b3433179bb5d876
    */
 
-
   /*
    * The MIT License
    *