X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fhtsjdk%2FHtsContigDb.java;fp=src%2Fjalview%2Fext%2Fhtsjdk%2FHtsContigDb.java;h=8cce87a84c59fa2b47c618b49dc94e7e69ece731;hb=469dc5a0e6d06a2c8a27f27b712ccfdbe3314ee4;hp=9a985b63857e3f584e20bc298e23205ac268b7ce;hpb=f32142e854e6eadb5c85c4379d596369bd7098c5;p=jalview.git

diff --git a/src/jalview/ext/htsjdk/HtsContigDb.java b/src/jalview/ext/htsjdk/HtsContigDb.java
index 9a985b6..8cce87a 100644
--- a/src/jalview/ext/htsjdk/HtsContigDb.java
+++ b/src/jalview/ext/htsjdk/HtsContigDb.java
@@ -261,7 +261,7 @@ public class HtsContigDb
   {
     if (!isValid() || !refFile.isIndexed())
     {
-      System.err.println(
+      jalview.bin.Console.errPrintln(
               "Cannot read contig as file is invalid or not indexed");
       return null;
     }