X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fhtsjdk%2FVCFReader.java;fp=src%2Fjalview%2Fext%2Fhtsjdk%2FVCFReader.java;h=176b21dec490ab5d3239d09f00f46131a96fb2a4;hb=3459a8a691cb22508d7067f240b7254e588e77d3;hp=e91164a1d4e448de0564c0c8ae9d853387937b5d;hpb=5b27f1062b2203c4c31702e205f4c78e1992063e;p=jalview.git

diff --git a/src/jalview/ext/htsjdk/VCFReader.java b/src/jalview/ext/htsjdk/VCFReader.java
index e91164a..176b21d 100644
--- a/src/jalview/ext/htsjdk/VCFReader.java
+++ b/src/jalview/ext/htsjdk/VCFReader.java
@@ -47,10 +47,12 @@ public class VCFReader implements Closeable, Iterable<VariantContext>
   private VCFFileReader reader;
 
   /**
-   * Constructor given a raw or compressed VCF file or a (csi or tabix) index file
+   * Constructor given a raw or compressed VCF file or a (csi or tabix) index
+   * file
    * <p>
-   * If the file path ends in ".tbi" or ".csi", <em>or</em> appending one of these
-   * extensions gives a valid file path, open as indexed, else as unindexed.
+   * If the file path ends in ".tbi" or ".csi", <em>or</em> appending one of
+   * these extensions gives a valid file path, open as indexed, else as
+   * unindexed.
    * 
    * @param f
    * @throws IOException
@@ -153,7 +155,7 @@ public class VCFReader implements Closeable, Iterable<VariantContext>
           final String chrom, final int start, final int end)
   {
     final CloseableIterator<VariantContext> it = reader.iterator();
-    
+
     return new CloseableIterator<VariantContext>()
     {
       boolean atEnd = false;