X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fjmol%2FJalviewJmolBinding.java;h=848eb75f85f4beb2141fe10ebaa4f394188a45a6;hb=304e64fb34b32659be1bbfd39fb4e15b2f79586e;hp=903d9b7c53faed57f0b58f2490c44f61758de5d2;hpb=61ff8fb4efa315c35149c9d11850d99e3d00c441;p=jalview.git

diff --git a/src/jalview/ext/jmol/JalviewJmolBinding.java b/src/jalview/ext/jmol/JalviewJmolBinding.java
index 903d9b7..848eb75 100644
--- a/src/jalview/ext/jmol/JalviewJmolBinding.java
+++ b/src/jalview/ext/jmol/JalviewJmolBinding.java
@@ -32,7 +32,6 @@ import java.util.StringTokenizer;
 import java.util.Vector;
 
 import javax.swing.SwingUtilities;
-
 import org.jmol.adapter.smarter.SmarterJmolAdapter;
 import org.jmol.api.JmolAppConsoleInterface;
 import org.jmol.api.JmolSelectionListener;
@@ -60,13 +59,13 @@ import jalview.structure.StructureSelectionManager;
 import jalview.structures.models.AAStructureBindingModel;
 import jalview.ws.dbsources.Pdb;
 import javajs.util.BS;
-
 public abstract class JalviewJmolBinding extends AAStructureBindingModel
         implements JmolStatusListener, JmolSelectionListener,
         ComponentListener
 {
   private String lastMessage;
 
+
   /*
    * when true, try to search the associated datamodel for sequences that are
    * associated with any unknown structures in the Jmol view.
@@ -137,6 +136,7 @@ public abstract class JalviewJmolBinding extends AAStructureBindingModel
     {
       return null;
     }
+
     String cmd = command.getCommand();
     jmolHistory(false);
     if (lastCommand == null || !lastCommand.equals(cmd))
@@ -186,6 +186,7 @@ public abstract class JalviewJmolBinding extends AAStructureBindingModel
     return null;
   }
 
+
   /**
    * map between index of model filename returned from getPdbFile and the first
    * index of models from this file in the viewer. Note - this is not trimmed -
@@ -297,6 +298,7 @@ public abstract class JalviewJmolBinding extends AAStructureBindingModel
 
     jmolScript(cmd.toString());
     jmolHistory(true);
+
   }
 
   private boolean debug = true;
@@ -782,6 +784,7 @@ public abstract class JalviewJmolBinding extends AAStructureBindingModel
     setLoadingFromArchive(false);
   }
 
+
   protected IProgressIndicator getIProgressIndicator()
   {
     return null;
@@ -825,6 +828,7 @@ public abstract class JalviewJmolBinding extends AAStructureBindingModel
 
   }
 
+
   public void showHelp()
   {
     showUrl("http://wiki.jmol.org"