X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fjmol%2FJmolParser.java;fp=src%2Fjalview%2Fext%2Fjmol%2FJmolParser.java;h=92c762bb861bb38ca1d5e712587aa278eb4e8ce9;hb=4a28fee3e0c129a01268d26e1396b045bd893fb8;hp=0ca2ba81184c44367da7dfc10344d5dbd7613359;hpb=6ca8a32d88328b8f2162512f41c657c87e131045;p=jalview.git diff --git a/src/jalview/ext/jmol/JmolParser.java b/src/jalview/ext/jmol/JmolParser.java index 0ca2ba8..92c762b 100644 --- a/src/jalview/ext/jmol/JmolParser.java +++ b/src/jalview/ext/jmol/JmolParser.java @@ -92,6 +92,7 @@ public class JmolParser extends StructureFile implements JmolStatusListener { super(fp, doXferSettings); } + public JmolParser(FileParse fp) throws IOException { super(fp); @@ -488,7 +489,8 @@ public class JmolParser extends StructureFile implements JmolStatusListener { int length = sq.getLength(); boolean ssFound = false; - Annotation asecstr[] = new Annotation[length + (firstResNum-sq.getStart())]; + Annotation asecstr[] = new Annotation[length + + (firstResNum - sq.getStart())]; for (int p = 0; p < length; p++) { if (secstr[p] >= 'A' && secstr[p] <= 'z')