X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fjmol%2FJmolParser.java;fp=src%2Fjalview%2Fext%2Fjmol%2FJmolParser.java;h=a276fb6ea5efadb551daac4798e054744e3078b9;hb=a0ac724dba7d556966b546d4a0093449c397be84;hp=f0e477cb0f6c54b234a12e0af7465c5ee7693b9f;hpb=06379070d6c2267efe3a30926d84c51a48d1cdce;p=jalview.git

diff --git a/src/jalview/ext/jmol/JmolParser.java b/src/jalview/ext/jmol/JmolParser.java
index f0e477c..a276fb6 100644
--- a/src/jalview/ext/jmol/JmolParser.java
+++ b/src/jalview/ext/jmol/JmolParser.java
@@ -305,7 +305,7 @@ public class JmolParser extends StructureFile implements JmolStatusListener
       {
         Alignment al = new Alignment(prot.toArray(new SequenceI[0]));
         EBIAlfaFold.addAlphaFoldPAE(al, new File(this.getPAEMatrix()), 0,
-                null, false, false);
+                null, false, false, null);
 
         if (al.getAlignmentAnnotation() != null)
         {